Welcome to AtlasLens

AtlasLens

Dataset Exploration

Dataset Overview

Interactive Visualisations


Tip: click and drag on either plot to zoom.

Metadata UMAP


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Expression UMAP


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Cell Inspector

Click a cell on either UMAP to view its metadata.


Side-by-side expression of two genes on the same UMAP. Pick genes in the sidebar and click Show Plot — plots do not re-render automatically.


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Average expression and the percent of cells expressing each gene, per group. Color = mean expression z-scored across groups (centred and scaled per gene); dot size = percentage of cells in the group expressing the gene.


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Single-cell QC: number of detected genes, total UMI counts, and percent of mitochondrial UMIs per cell. Pick a grouping column and click Show Plot .

nFeature_RNA

nCount_RNA

percent.mt


Download all QC violins (PNG) Download all QC violins (PDF)

Gene Function (COCOA)

Analysis Results

Differential Expression Analysis

Analysis Results

GO Enrichment Analysis

GO Enrichment Results

Time Series Information

Expression Over Time

Time Series analysis is not available for this dataset.

No metadata column with usable timepoint values was detected (the temporal modules need ordered timepoints such as numeric times, Day_N / Hour_N labels, or a baseline-acute-chronic ladder). The controls have been disabled. Every other tab - Dataset Exploration, Differential Expression, GO Enrichment and Gene Function (COCOA) - works normally.


Select multiple genes (or use all genes). The heatmap shows the mean expression of each gene at each timepoint. Genes are grouped by temporal expression pattern using k-means clustering on the z-scored shape of each gene's trajectory (cluster count = number of timepoints).



This view shows the mean expression trajectory across ordered timepoints with standard error bars. Select a single gene.



Per-timepoint expression distribution as boxplots. Box = IQR, line = median, whiskers = 1.5x IQR. Select a single gene.



Single-gene expression distribution across timepoints. Select a single gene.


Analysis History

Click an item to load results immediately

Tip: after restoring a saved analysis the relevant tab (DEA / COCOA / GO) hydrates with the cached results. From there, click Download R script to export a self-contained script that reproduces it from the same source dataset.